{"id":2367,"date":"2022-11-03T21:16:30","date_gmt":"2022-11-04T02:16:30","guid":{"rendered":"https:\/\/www.bocsci.com\/blog\/?p=2367"},"modified":"2022-12-28T00:36:36","modified_gmt":"2022-12-28T05:36:36","slug":"click-chemistry-and-its-applications-in-medicinal-chemical-synthesis","status":"publish","type":"post","link":"https:\/\/www.bocsci.com\/blog\/click-chemistry-and-its-applications-in-medicinal-chemical-synthesis\/","title":{"rendered":"Click Chemistry and Its Applications in Medicinal Chemical Synthesis"},"content":{"rendered":"\n<p>Click chemistry has developed organic reaction methodologies that are rapid, effective, and specifically selective, and its reaction system is not sensitive to oxygen or water. This article first reviews the types of click and click-like reactions, and then introduces their applications in medicinal chemistry.<\/p>\n\n\n\n<p><strong>Types of click reactions<\/strong><\/p>\n\n\n\n<p><strong>1.Cycloaddition reaction<\/strong><\/p>\n\n\n\n<p>In the earliest click reaction, Cu(I) was used to catalyze azide and terminal alkyne to obtain selective 1,4-disubstituted 1,2,3-triazole compounds, as shown in the first reaction in figure 1. Without Cu catalysis, the reaction is slow and prone to obtain a mixture of 1,4-disubstituted and 1,5-disubstituted triazole.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-1.-Three-commonly-used-cycloaddition-click-reactions.png\"><img decoding=\"async\" loading=\"lazy\" width=\"672\" height=\"330\" src=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-1.-Three-commonly-used-cycloaddition-click-reactions.png\" alt=\"Three commonly used cycloaddition click reactions\" class=\"wp-image-2368\" srcset=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-1.-Three-commonly-used-cycloaddition-click-reactions.png 672w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-1.-Three-commonly-used-cycloaddition-click-reactions-300x147.png 300w\" sizes=\"(max-width: 672px) 100vw, 672px\" \/><\/a><figcaption class=\"wp-element-caption\">Figure 1. Three commonly used cycloaddition click reactions<\/figcaption><\/figure><\/div>\n\n\n<p>If the terminal alkyne is replaced with a macrocyclic alkyne, the cycloaddition reaction is more likely to occur, thus releasing the ring tension of the macrocyclic alkyne sp hybridization, which does not require Cu catalysis and is more friendly to biological systems. It is known as strain-promoted azide-alkyne cycloaddition (SPAAC), as the second reaction in figure 1.<\/p>\n\n\n\n<p>If the azide is replaced with tetrazine and the macrocyclic alkyne group is replaced with the macrocyclic trans-alkenyl group, then the DA cycloaddition occurs first, followed by the reverse reaction to remove N<sub>2<\/sub>, as shown in the third reaction in figure 1. Since tetrazine is an electron deficient diene unit, which is opposite to the electron rich diene unit in general DA, it is called inverse electron-demand Diels\u2013Alder (IEDDA) reaction.<\/p>\n\n\n\n<p><strong>2.Sulfur (VI) fluoride exchange reaction, SuFEx<\/strong><\/p>\n\n\n\n<p>This is a method close to click reaction, which uses sulfur tetrafluoride (O=SF<sub>4<\/sub>) or sulfuryl fluoride (SO<sub>2<\/sub>F<sub>2<\/sub>) to prepare sulfonyl derivatives with nucleophile (alcohol or amine), and then reacts with another nucleophile to obtain disubstituted sulfonyl derivatives, as shown in figure 2. Sulfur (VI) fluoride exchange reaction is carried out by using synthetic blocks containing amino heads to efficiently prepare combinatorial chemical libraries. Although they may have competitive reactions in organisms and cannot be used in bioorthogonal reactions, they are suitable for high-throughput reactions in <a href=\"https:\/\/www.bocsci.com\/compound-screening-platform.html\">molecular screening<\/a> and <a href=\"https:\/\/www.bocsci.com\/custom-synthesis.html\">synthesis<\/a>, and can be directly used in bioassay experiments due to their almost quantitative high yield and biological system compatibility.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-2.-Sulfur-VI-fluoride-exchange-reaction-can-achieve-the-synthesis-and-screening-of-high-throughput-combinatorial-molecular-libraries..png\"><img decoding=\"async\" loading=\"lazy\" width=\"731\" height=\"381\" src=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-2.-Sulfur-VI-fluoride-exchange-reaction-can-achieve-the-synthesis-and-screening-of-high-throughput-combinatorial-molecular-libraries..png\" alt=\"Sulfur (VI) fluoride exchange reaction can achieve the synthesis and screening of high-throughput combinatorial molecular libraries\" class=\"wp-image-2369\" srcset=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-2.-Sulfur-VI-fluoride-exchange-reaction-can-achieve-the-synthesis-and-screening-of-high-throughput-combinatorial-molecular-libraries..png 731w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-2.-Sulfur-VI-fluoride-exchange-reaction-can-achieve-the-synthesis-and-screening-of-high-throughput-combinatorial-molecular-libraries.-300x156.png 300w\" sizes=\"(max-width: 731px) 100vw, 731px\" \/><\/a><figcaption class=\"wp-element-caption\">Figure 2. Sulfur (VI) fluoride exchange reaction can achieve the synthesis and screening of high-throughput combinatorial molecular libraries.<\/figcaption><\/figure><\/div>\n\n\n<p><strong>3.Addition reaction<\/strong><\/p>\n\n\n\n<p>Addition reaction often requires free radical initiation conditions (light, reagent catalysis, <em>etc.<\/em>). The thiol-ene\/amine-ene reaction based on Michael addition was developed, as shown in figure 3. The presence of electron withdrawing groups makes the reaction easier to occur, and the reaction conditions are milder compared with free radical reaction.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-3.-Schematic-diagram-of-addition-reaction.png\"><img decoding=\"async\" loading=\"lazy\" width=\"782\" height=\"349\" src=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-3.-Schematic-diagram-of-addition-reaction.png\" alt=\"Schematic diagram of addition reaction\" class=\"wp-image-2370\" srcset=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-3.-Schematic-diagram-of-addition-reaction.png 782w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-3.-Schematic-diagram-of-addition-reaction-300x134.png 300w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-3.-Schematic-diagram-of-addition-reaction-768x343.png 768w\" sizes=\"(max-width: 782px) 100vw, 782px\" \/><\/a><figcaption class=\"wp-element-caption\">Figure 3. Schematic diagram of addition reaction<\/figcaption><\/figure><\/div>\n\n\n<p><strong>4.Nucleophilic substitution<\/strong><\/p>\n\n\n\n<p>Nucleophilic substitution reaction refers to the nucleophilic substitution and ring opening reaction of epoxide or propidium, as shown in figure 4. It can be carried out in ethanol and water systems, with good ring-opening site selectivity, high yield, and convenient post-processing. However, since the amino group of the reaction substrate is also prone to attack other electrophilic functional groups, there may be by-products of competitive reactions, which is not as applicable as cycloaddition, and can only be counted as click-like reactions.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-4.-Schematic-diagram-of-the-ring-opening-reaction-by-nucleophilic-substitution-of-epoxide-or-propidium.png\"><img decoding=\"async\" loading=\"lazy\" width=\"611\" height=\"337\" src=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-4.-Schematic-diagram-of-the-ring-opening-reaction-by-nucleophilic-substitution-of-epoxide-or-propidium.png\" alt=\"Schematic diagram of the ring opening reaction by nucleophilic substitution of epoxide or propidium\" class=\"wp-image-2371\" srcset=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-4.-Schematic-diagram-of-the-ring-opening-reaction-by-nucleophilic-substitution-of-epoxide-or-propidium.png 611w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-4.-Schematic-diagram-of-the-ring-opening-reaction-by-nucleophilic-substitution-of-epoxide-or-propidium-300x165.png 300w\" sizes=\"(max-width: 611px) 100vw, 611px\" \/><\/a><figcaption class=\"wp-element-caption\">Figure 4. Schematic diagram of the ring opening reaction by nucleophilic substitution of epoxide or propidium<\/figcaption><\/figure><\/div>\n\n\n<p><strong>5.Carbonyl condensation reaction<\/strong><\/p>\n\n\n\n<p>These reactions include the synthesis of hydrazone and oxime, as shown in figure 5, and some heterocycles containing N and O. This kind of reaction also has applications similar to click, but the reaction rate is relatively slow, and is easy to have competitive reactions, so it is rarely used in the field of bioorthogonal chemistry. Since the molecular fragments obtained by the reaction have good drug properties, they are more widely used in drug synthesis. With different substituted substrates, the structure-activity relationships can be further explored.<\/p>\n\n\n<div class=\"wp-block-image\">\n<figure class=\"aligncenter size-full\"><a href=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-5.-Reaction-diagram-of-hydrazone-and-oxime-formed-by-carbonyl-condensation.png\"><img decoding=\"async\" loading=\"lazy\" width=\"727\" height=\"513\" src=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-5.-Reaction-diagram-of-hydrazone-and-oxime-formed-by-carbonyl-condensation.png\" alt=\"Reaction diagram of hydrazone and oxime formed by carbonyl condensation\" class=\"wp-image-2372\" srcset=\"https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-5.-Reaction-diagram-of-hydrazone-and-oxime-formed-by-carbonyl-condensation.png 727w, https:\/\/www.bocsci.com\/blog\/wp-content\/uploads\/2022\/11\/Figure-5.-Reaction-diagram-of-hydrazone-and-oxime-formed-by-carbonyl-condensation-300x212.png 300w\" sizes=\"(max-width: 727px) 100vw, 727px\" \/><\/a><figcaption class=\"wp-element-caption\">Figure 5. Reaction diagram of hydrazone and oxime formed by carbonyl condensation<\/figcaption><\/figure><\/div>\n\n\n<p><strong>Applications of click reaction in medicinal chemistry<\/strong><\/p>\n\n\n\n<p><strong>1.For bioelectronic isoform replacement<\/strong><\/p>\n\n\n\n<p>The drug properties of 1,2,3-triazole fragments are similar to those of nitrogen aromatic rings such as 1,2-diazole and amide bonds, so fragment substitutions or skeleton transitions can be performed to explore the chemical space for optimizing the lead compound.<\/p>\n\n\n\n<p><strong>2.As a peptide-like fragment<\/strong><\/p>\n\n\n\n<p>The 1,2,3-triazole fragment is similar to the amide bond (peptide bond), and will not be hydrolyzed by protease. On the one hand, skeleton transitions can be made to explore more possible lead compounds. On the other hand, the more stable chemical property of triazole can be exploited to improve ligand selectivity. Finally, the click reaction of triazole formation can be used to achieve high efficiency of cyclic peptide macrocyclic closure reaction and ensure certain protease tolerance.<\/p>\n\n\n\n<p><strong>3.Linking different molecular fragments<\/strong><\/p>\n\n\n\n<p>In medicinal chemistry, researchers can use triazole fragments to link different pharmacophores. It can also serve as a linker junction site for <a href=\"https:\/\/www.bocsci.com\/products\/protac-2526.html\">PROTAC<\/a> and conjugate peptides, antibodies, and small molecules (<a href=\"https:\/\/www.bocsci.com\/adcs-list-238.html\">ADCs<\/a>) for targeted drug delivery.<\/p>\n\n\n\n<p><strong>4.Efficient synthesis and in situ screening of combinatorial chemical libraries<\/strong><\/p>\n\n\n\n<p>When efficient click chemistry combines with the idea of combinatorial chemistry, researchers can achieve high-throughput molecular library synthesis and in situ screening.<\/p>\n\n\n\n<p><strong>5.In situ synthesis<\/strong><\/p>\n\n\n\n<p>In situ synthesis of drug molecules in biological systems is closer to the application of bioorthogonal chemistry. For example, the template effect of the target protein and the idea of dynamic combinatorial chemistry can be used to achieve in situ click synthesis and affinity screening of fragments with low activity (IC50 &gt; 1 mM).<\/p>\n\n\n\n<p><strong>Conclusion<\/strong><\/p>\n\n\n\n<p>More click reactions or click-like reactions are needed to enrich the synthesis methods. At the same time, it is critical to reduce the dependence on metal catalysts and improve the compatibility of biological systems, which can accelerate the discovery of lead compounds and ultimately lift the efficiency of <a href=\"https:\/\/www.bocsci.com\/drug-discovery.html\">drug development<\/a>.<\/p>\n\n\n\n<p>Related Products:<\/p>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table><tbody><tr><td>Product<\/td><td>Description<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/products\/protac-2526.html\">PROTAC<\/a><\/td><td>PROTACs technology is a strategy that uses the ubiquitin\u2010protease system (USP) to target specific proteins and induce their degradation in cells.<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/adcs-list-238.html\">ADCs<\/a><\/td><td>Antibody-drug conjugates or ADCs consist of an antibody, a cytotoxic drug, and a linker that attaches the two.<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p> Related Services: <\/p>\n\n\n\n<figure class=\"wp-block-table is-style-stripes\"><table><tbody><tr><td>Service<\/td><td>Description<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/reactions.html\">Reactions<\/a><\/td><td>BOC Sciences has internal expertise in asymmetric synthesis, transition metal catalytic reactions, low-temperature and high-pressure reactions, and heterocyclic chemistry.<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/targeted-protein-degradation-platform-protacs.html\">Targeted Protein Degradation Platform (PROTACs)<\/a><\/td><td>BOC Sciences provides a range of Protein Degraders (PROTAC molecules) targeting various protein targets, as well as Degrader Building Blocks, linkers and peptides to support TPD research and development.<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/drug-discovery.html\">Drug Discovery<\/a><\/td><td>Our discovery &amp; development solutions capabilities include comprehensive scientific solutions from design to execution for early drug discovery to investigational new drug enabling studies.<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/compound-screening-platform.html\">Compound Screening<\/a><\/td><td>BOC Sciences uses modern screening technology to assist customers in drug research and development, thereby accelerating the process of drug innovation.<\/td><\/tr><tr><td><a href=\"https:\/\/www.bocsci.com\/custom-synthesis.html\">Custom Synthesis<\/a><\/td><td>BOC Sciences\u2019 scientists are skilled in the latest methods in synthetic organic chemistry.<\/td><\/tr><\/tbody><\/table><\/figure>\n\n\n\n<p>References<\/p>\n\n\n\n<ol type=\"1\">\n<li>Kaur, J., Saxena, M. &amp; Rishi, N. An Overview of Recent Advances in Biomedical Applications of Click Chemistry. <em>Bioconjugate Chemistry<\/em> 32, 1455-1471 (2021).<\/li>\n\n\n\n<li>Blackman, M. L., Royzen, M. &amp; Fox, J. M. Tetrazine Ligation: Fast Bioconjugation Based on Inverse-Electron-Demand Diels\u2212Alder Reactivity.<em> J. Am. Chem. Soc<\/em>. 130, 13518-13519 (2008).<\/li>\n\n\n\n<li>Fan, X. <em>et al<\/em>. Optimized Tetrazine Derivatives for Rapid Bioorthogonal Decaging in Living Cells. <em>Angew. Chem., Int. Ed<\/em>. 55, 14046-14050 (2016).<\/li>\n\n\n\n<li>Yao, T., Xu, X. &amp; Huang, R. Recent Advances about the Applications of Click Reaction in Chemical Proteomics. <em>Molecules<\/em> 26, 5368 (2021).<\/li>\n\n\n\n<li>Jiang, X. <em>et al<\/em>. Recent applications of click chemistry in drug discovery. <em>Expert Opin. Drug Discov<\/em>. 14, 779-789 (2019).<\/li>\n\n\n\n<li>Meng, G. <em>et al<\/em>. Modular click chemistry libraries for functional screens using a diazotizing reagent. <em>Nature<\/em> 574, 86-89 (2019).<\/li>\n\n\n\n<li>Kitamura, S. <em>et al<\/em>. Sulfur(VI) Fluoride Exchange (SuFEx)-Enabled High-Throughput Medicinal Chemistry. <em>J. Am. Chem. Soc<\/em>. 142, 10899-10904 (2020).<\/li>\n\n\n\n<li>Ragnarsson, U. Synthetic methodology for alkyl substituted hydrazines. <em>Chem. Soc. Rev.<\/em> 30, 205-213 (2001).<\/li>\n<\/ol>\n","protected":false},"excerpt":{"rendered":"<p>Click chemistry has developed organic reaction methodologies that are rapid, effective, and specifically selective, and its reaction system is not sensitive to oxygen or water. This article first reviews the [&hellip;]<\/p>\n","protected":false},"author":1,"featured_media":2378,"comment_status":"closed","ping_status":"open","sticky":false,"template":"","format":"standard","meta":[],"categories":[1],"tags":[760,761,762],"_links":{"self":[{"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/posts\/2367"}],"collection":[{"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/posts"}],"about":[{"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/types\/post"}],"author":[{"embeddable":true,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/users\/1"}],"replies":[{"embeddable":true,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/comments?post=2367"}],"version-history":[{"count":3,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/posts\/2367\/revisions"}],"predecessor-version":[{"id":2438,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/posts\/2367\/revisions\/2438"}],"wp:featuredmedia":[{"embeddable":true,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/media\/2378"}],"wp:attachment":[{"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/media?parent=2367"}],"wp:term":[{"taxonomy":"category","embeddable":true,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/categories?post=2367"},{"taxonomy":"post_tag","embeddable":true,"href":"https:\/\/www.bocsci.com\/blog\/wp-json\/wp\/v2\/tags?post=2367"}],"curies":[{"name":"wp","href":"https:\/\/api.w.org\/{rel}","templated":true}]}}